Putrefaction in the context of "Cadaver Tomb of René of Chalon"

Bacteria are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in mutualistic, commensal and parasitic relationships with plants and animals. Most bacteria have not been characterised and there are many species that cannot be grown in the laboratory. The study of bacteria is known as bacteriology, a branch of microbiology.

Like all animals, humans carry vast numbers (approximately 10 to 10) of bacteria. Most are in the gut, though there are many on the skin. Most of the bacteria in and on the body are harmless or rendered so by the protective effects of the immune system, and many are beneficial, particularly the ones in the gut. However, several species of bacteria are pathogenic and cause infectious diseases, including cholera, syphilis, anthrax, leprosy, tuberculosis, tetanus and bubonic plague. The most common fatal bacterial diseases are respiratory infections. Antibiotics are used to treat bacterial infections and are also used in farming, making antibiotic resistance a growing problem. Bacteria are important in sewage treatment and the breakdown of oil spills, the production of cheese and yogurt through fermentation, the recovery of gold, palladium, copper and other metals in the mining sector (biomining, bioleaching), as well as in biotechnology, and the manufacture of antibiotics and other chemicals.

Asepsis is the state of being free from disease-causing micro-organisms (such as pathogenic bacteria, viruses, pathogenic fungi, and parasites). There are two categories of asepsis: medical and surgical. The modern day notion of asepsis is derived from the older antiseptic techniques, a shift initiated by different individuals in the 19th century who introduced practices such as the sterilizing of surgical tools and the wearing of surgical gloves during operations. The goal of asepsis is to eliminate infection, not to achieve sterility. Ideally, an operating field is sterile, meaning it is free of all biological contaminants (e.g. fungi, bacteria, viruses), not just those that can cause disease, putrefaction, or fermentation. Even in an aseptic state, a condition of sterile inflammation may develop. The term often refers to those practices used to promote or induce asepsis in an operative field of surgery or medicine to prevent infection.

An antiseptic (Greek: ἀντί, romanized: anti, lit. 'against' and σηπτικός, sēptikos, 'putrefactive') is an antimicrobial substance or compound that is applied to living tissue to reduce the possibility of sepsis, infection, or putrefaction. Antiseptics are generally distinguished from antibiotics by the latter's ability to safely destroy bacteria within the body, and from disinfectants, which destroy microorganisms found on non-living objects.

Antibacterials include antiseptics that have the proven ability to act against bacteria. Microbicides which destroy virus particles are called viricides or antivirals. Antifungals, also known as antimycotics, are pharmaceutical fungicides used to treat and prevent mycosis (fungal infection).

A charnel ground (Sanskrit: श्मशान; IAST: śmaśāna; Tibetan pronunciation: durtrö; Tibetan: དུར་ཁྲོད, Wylie: dur khrod) is an above-ground site for the putrefaction of bodies, generally human, where formerly living tissue is left to decompose uncovered. Although it may have demarcated locations within it functionally identified as burial grounds, cemeteries and crematoria, it is distinct from these as well as from crypts or burial vaults.

In a religious sense, it is also a very important location for sadhana and ritual activity for Indo-Tibetan traditions of Dharma, particularly those traditions iterated by the Tantric view such as Kashmiri Shaivism, Kaula tradition, Esoteric Buddhism, Vajrayana, Mantrayana, Dzogchen, and the sadhana of Chöd, Phowa and Zhitro, etc. The charnel ground is also an archetypal liminality that figures prominently in the literature and liturgy and as an artistic motif in Dharmic Traditions and cultures iterated by the more antinomian and esoteric aspects of traditional Indian culture.

Sapropel (a contraction of Ancient Greek words sapros and pelos, meaning putrefaction and mud (or clay), respectively) is a term used in marine geology to describe dark-coloured sediments that are rich in organic matter. Organic carbon concentrations in sapropels commonly exceed 2 wt.% in weight.

The term sapropel events may also refer to cyclic oceanic anoxic events (OAE), in particular those affecting the Mediterranean Sea with a periodicity of about 21,000 years.

In alchemy, nigredo, or blackness, means putrefaction or decomposition. Many alchemists believed that as a first step in the pathway to the philosopher's stone, all alchemical ingredients had to be cleansed and cooked extensively to a uniform black matter.

In analytical psychology, the term became a metaphor for "the dark night of the soul, when an individual confronts the shadow within."