Respiratory system in the context of Human pharynx

Exhalation (or expiration) is the flow of the breath out of an organism. In animals, it is the movement of air from the lungs out of the airways, to the external environment during breathing.This happens due to elastic properties of the lungs, as well as the internal intercostal muscles which lower the rib cage and decrease thoracic volume. As the thoracic diaphragm relaxes during exhalation it causes the tissue it has depressed to rise superiorly and put pressure on the lungs to expel the air. During forced exhalation, as when blowing out a candle, expiratory muscles including the abdominal muscles and internal intercostal muscles generate abdominal and thoracic pressure, which forces air out of the lungs.

Exhaled air is 4% carbon dioxide, a waste product of cellular respiration during the production of energy, which is stored as ATP. Exhalation has a complementary relationship to inhalation which together make up the respiratory cycle of a breath.

An aquatic animal is any animal, whether vertebrate or invertebrate, that lives in a body of water for all or most of its lifetime. Aquatic animals generally conduct aquatic respiration by extracting dissolved oxygen in water via specialised respiratory organs called gills, through the skin or across enteral mucosae, although some are secondarily aquatic animals (e.g. marine reptiles and marine mammals) evolved from terrestrial ancestors that re-adapted to aquatic environments, in which case they actually use lungs to breathe air and are essentially holding their breath when living in water. Some species of gastropod mollusc, such as the eastern emerald sea slug, are even capable of kleptoplastic photosynthesis via endosymbiosis with ingested yellow-green algae.

Almost all aquatic animals reproduce in water, either oviparously or viviparously, and many species routinely migrate between different water bodies during their life cycle. Some animals have fully aquatic life stages (typically as eggs and larvae), while as adults they become terrestrial or semi-aquatic after undergoing metamorphosis. Such examples include amphibians such as frogs, many flying insects such as mosquitoes, mayflies, dragonflies, damselflies and caddisflies, as well as some species of cephalopod molluscs such as the algae octopus (whose larvae are completely planktonic, but adults are highly terrestrial).

Terrestrial animals are animals that live predominantly or entirely on land (e.g., cats, chickens, ants, most spiders), as compared with aquatic animals (e.g., fish, whales, octopuses, lobsters, etc.), who live predominantly or entirely in bodies of water; and semiaquatic animals (e.g., crocodilians, seals, platypus and most amphibians), who inhabit coastal, riparian or wetland areas and rely on both aquatic and terrestrial habitats. While most insects (who constitute over half of all known species in the animal kingdom) are terrestrial, some groups, such as mosquitoes and dragonflies, spend their egg and larval stages in water but emerge as fully terrestrial adults (imagos) after completing metamorphosis.

Terrestrial animals conduct respiratory gas exchange directly with the atmosphere, typically via specialized respiratory organs known as lungs, or via cutaneous respiration across the skin. They have also evolved homeostatic features such as impermeable cuticles that can restrict fluid loss, temperature fluctuations and infection, and an excretory system that can filter out nitrogenous waste in the form of urea or uric acid, in contrast to the ammonia-based excretion of aquatic animals. Without the buoyancy of an aqueous environment to support their weight, they have evolved robust skeletons that can hold up their body shape, as well as powerful appendages known as legs or limbs to facilitate terrestrial locomotion, although some perform limbless locomotion using body surface projections such as scales and setae. Some terrestrial animals even have wings or membranes that act as airfoils to generate lift, allowing them to fly and/or glide as airborne animals.

The brainstem (or brain stem) is the posterior stalk-like part of the brain that connects the cerebrum with the spinal cord. In the human brain the brainstem is composed of the midbrain, the pons, and the medulla oblongata. The midbrain is continuous with the thalamus of the diencephalon through the tentorial notch, and sometimes the diencephalon is included in the brainstem.

The brainstem is very small, making up around only 2.6 percent of the brain's total weight. It has the critical roles of regulating heart and respiratory function, helping to control heart rate and breathing rate. It also provides the main motor and sensory nerve supply to the face and neck via the cranial nerves. Ten pairs of cranial nerves come from the brainstem. Other roles include the regulation of the central nervous system and the body's sleep cycle. It is also of prime importance in the conveyance of motor and sensory pathways from the rest of the brain to the body, and from the body back to the brain. These pathways include the corticospinal tract (motor function), the dorsal column-medial lemniscus pathway (fine touch, vibration sensation, and proprioception), and the spinothalamic tract (pain, temperature, itch, and crude touch).

The lungs are the primary organs of the respiratory system in many animals, including humans. In mammals and most other tetrapods, two lungs are located near the backbone on either side of the heart. Their function in the respiratory system is to extract oxygen from the atmosphere and transfer it into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere, in a process of gas exchange. Respiration is driven by different muscular systems in different species. Mammals, reptiles and birds use their musculoskeletal systems to support and foster breathing. In early tetrapods, air was driven into the lungs by the pharyngeal muscles via buccal pumping, a mechanism still seen in amphibians. In humans, the primary muscle that drives breathing is the diaphragm. The lungs also provide airflow that makes vocalisation including speech possible.

Humans have two lungs, a right lung and a left lung. They are situated within the thoracic cavity of the chest. The right lung is bigger than the left, and the left lung shares space in the chest with the heart. The lungs together weigh approximately 1.3 kilograms (2.9 lb), and the right is heavier. The lungs are part of the lower respiratory tract that begins at the trachea and branches into the bronchi and bronchioles, which receive air breathed in via the conducting zone. These divide until air reaches microscopic alveoli, where gas exchange takes place. Together, the lungs contain approximately 2,400 kilometers (1,500 mi) of airways and 300 to 500 million alveoli. Each lung is enclosed within a pleural sac of two pleurae which allows the inner and outer walls to slide over each other whilst breathing takes place, without much friction. The inner visceral pleura divides each lung as fissures into sections called lobes. The right lung has three lobes and the left has two. The lobes are further divided into bronchopulmonary segments and lobules. The lungs have a unique blood supply, receiving deoxygenated blood sent from the heart to receive oxygen (the pulmonary circulation) and a separate supply of oxygenated blood (the bronchial circulation).

A biological system is a complex network which connects several biologically relevant entities. Biological organization spans several scales and are determined based different structures depending on what the system is. Examples of biological systems at the macro scale are populations of organisms. On the organ and tissue scale in mammals and other animals, examples include the circulatory system, the respiratory system, and the nervous system. On the micro to the nanoscopic scale, examples of biological systems are cells, organelles, macromolecular complexes and regulatory pathways. A biological system is not to be confused with a living system, such as a living organism.

The respiratory tract is the subdivision of the respiratory system involved with the process of conducting air to the alveoli for the purposes of gas exchange in mammals. The respiratory tract is lined with respiratory epithelium as respiratory mucosa.

Air is breathed in through the nose to the nasal cavity, where a layer of nasal mucosa acts as a filter and traps pollutants and other harmful substances found in the air. The turbinates increase the nasal cavity, helping it warm, humidify, and filter the incoming air (Sobiesk & Munakomi, 2023). Next, air moves into the pharynx, a passage that contains the intersection between the esophagus and the larynx. The opening of the larynx has a special flap of cartilage, the epiglottis, that opens to allow air to pass through but closes to prevent food from moving into the airway.

Soil gases (soil atmosphere) are the gases found in the air space between soil components. The spaces between the solid soil particles, if they do not contain water, are filled with air. The primary soil gases are nitrogen, carbon dioxide and oxygen. Oxygen is critical because it allows for respiration of both plant roots and soil organisms. Other natural soil gases include nitric oxide, nitrous oxide, methane, and ammonia. Some environmental contaminants below ground produce gas which diffuses through the soil such as from landfill wastes, mining activities, and contamination by petroleum hydrocarbons which produce volatile organic compounds. The soil atmosphere is also made of a variety of volatile compounds emitted by soil organisms, as respiratory metabolites, allelopathic compounds or semiochemical signals used in within-species and between-species communication. Soil is a net emitter of greenhouse gases, in particular when and where permafrost is thawing and degassing under the influence of climate warming.

Gases fill soil pores in the soil structure as water drains or is removed from a soil pore by evaporation or root absorption. The network of pores within the soil aerates, or ventilates, the soil. This aeration network becomes blocked when water enters soil pores. Not only are both soil air and soil water very dynamic parts of soil, but both are often inversely related.

Arthropods (/ˈɑːrθrəˌpɒd/ AR-thrə-pod) are invertebrates in the phylum Arthropoda. They possess an exoskeleton with a cuticle made of chitin, often mineralised with calcium carbonate, a body with differentiated (metameric) segments, and paired jointed appendages. In order to keep growing, they must go through stages of moulting, a process by which they shed their exoskeleton to reveal a new one. They form an extremely diverse group of up to ten million species.

Haemolymph is the analogue of blood for most arthropods. An arthropod has an open circulatory system, with a body cavity called a haemocoel through which haemolymph circulates to the interior organs. Like their exteriors, the internal organs of arthropods are generally built of repeated segments. They have ladder-like nervous systems, with paired ventral nerve cords running through all segments and forming paired ganglia in each segment. Their heads are formed by fusion of varying numbers of segments, and their brains are formed by fusion of the ganglia of these segments and encircle the esophagus. The respiratory and excretory systems of arthropods vary, depending as much on their environment as on the subphylum to which they belong.

Platyhelminthes (from Ancient Greek πλατύ platy 'flat' and ἕλμινς helmins 'parasitic worm') is a phylum of relatively simple bilaterian, unsegmented, soft-bodied invertebrates commonly called flatworms or flat worms. Being acoelomates (having no body cavity), and having no specialised circulatory and respiratory organs, they are restricted to having flattened shapes that allow oxygen and nutrients to pass through their bodies by diffusion. The digestive cavity has only one opening for both ingestion (intake of nutrients) and egestion (removal of undigested wastes); as a result, the food can not be processed continuously.

In traditional medicinal texts, Platyhelminthes are divided into Turbellaria, which are mostly non-parasitic animals such as planarians, and three entirely parasitic groups: Cestoda, Trematoda and Monogenea; however, since the turbellarians have since been proven not to be monophyletic, this classification is now deprecated. Free-living flatworms are mostly predators, and live in water or in shaded, humid terrestrial environments, such as leaf litter. Cestodes (tapeworms) and trematodes (flukes) have complex life-cycles, with mature stages that live as parasites in the digestive systems of fish or land vertebrates, and intermediate stages that infest secondary hosts. The eggs of trematodes are excreted from their main hosts, whereas adult cestodes generate vast numbers of hermaphroditic, segment-like proglottids that detach when mature, are excreted, and then release eggs. Unlike the other parasitic groups, the monogeneans are external parasites infesting aquatic animals, and their larvae metamorphose into the adult form after attaching to a suitable host.

Freshwater snails are gastropod mollusks that live in fresh water. There are many different families. They are found throughout the world in various habitats, ranging from ephemeral pools to the largest lakes, and from small seeps and springs to major rivers. The great majority of freshwater gastropods have a shell, with very few exceptions. Some groups of snails that live in freshwater respire using gills, whereas other groups need to reach the surface to breathe air. In addition, some are amphibious and have both gills and a lung (e.g. Ampullariidae). Most feed on algae, but many are detritivores and some are filter feeders.

Freshwater snails are indirectly among the deadliest animals to humans, as they carry parasitic worms that cause schistosomiasis, a disease estimated to kill between 10,000 and 200,000 people annually.

In physiology, respiration is a process that facilitates the transport of oxygen from the outside environment to bodily tissues and the removal of carbon dioxide using a respiratory system.

The physiological definition of respiration differs from the biological definition of cellular respiration, which is a metabolic process by which an organism obtains energy (in the form of ATP and NADPH) by oxidizing nutrients and releasing waste products. Although physiologic respiration is necessary to sustain cellular respiration and thus life in animals, the processes are distinct: cellular respiration takes place in individual cells of the organism, while physiologic respiration concerns the diffusion and transport of metabolites between the organism and the external environment.

Mycobacterium tuberculosis (M. tb), also known as Koch's bacillus, is a species of pathogenic bacteria in the family Mycobacteriaceae and the causative agent of tuberculosis.

First discovered in 1882 by Robert Koch, M. tuberculosis has an unusual, waxy coating on its cell surface primarily due to the presence of mycolic acid. This coating makes the cells impervious to Gram staining, and as a result, M. tuberculosis can appear weakly Gram-positive. Acid-fast stains such as Ziehl–Neelsen, or fluorescent stains such as auramine are used instead to identify M. tuberculosis with a microscope. The physiology of M. tuberculosis is highly aerobic and requires high levels of oxygen. Primarily a pathogen of the mammalian respiratory system, it infects the lungs. The most frequently used diagnostic methods for tuberculosis are the tuberculin skin test, acid-fast stain, culture, and polymerase chain reaction.

An asphyxiant gas, also known as a simple asphyxiant, is a nontoxic or minimally toxic gas which reduces or displaces the normal oxygen concentration in breathing air. Breathing of oxygen-depleted air can lead to death by asphyxiation (suffocation). Because asphyxiant gases are relatively inert and odorless, their presence in high concentration may not be noticed, except in the case of carbon dioxide (hypercapnia).

Toxic gases, by contrast, cause death by other mechanisms, such as competing with oxygen on the cellular level (e.g. carbon monoxide) or directly damaging the respiratory system (e.g. phosgene). Far smaller quantities of these are deadly.