Outcrossing in the context of Selectively bred

Selective breeding (also called artificial selection) is the process by which humans use animal breeding and plant breeding to selectively develop particular phenotypic traits (characteristics) by choosing which typically animal or plant males and females will sexually reproduce and have offspring together. Domesticated animals are known as breeds, normally bred by a professional breeder, while domesticated plants are known as varieties, cultigens, cultivars, or breeds. Two purebred animals of different breeds produce a crossbreed, and crossbred plants are called hybrids. Flowers, vegetables and fruit-trees may be bred by amateurs and commercial or non-commercial professionals: major crops are usually the provenance of the professionals.

In animal breeding artificial selection is often combined with techniques such as inbreeding, linebreeding, and outcrossing. In plant breeding, similar methods are used. Charles Darwin discussed how selective breeding had been successful in producing change over time in his 1859 book, On the Origin of Species. Its first chapter discusses selective breeding and domestication of such animals as pigeons, cats, cattle, and dogs. Darwin used artificial selection as an analogy to propose and explain the theory of natural selection but distinguished the latter from the former as a separate process that is non-directed.

A crossbreed is an organism with purebred parents of two different breeds, varieties, or populations. A domestic animal of unknown ancestry, where the breed status of only one parent or grandparent is known, may also be called a crossbreed though the term "mixed breed" is technically more accurate. Outcrossing is a type of crossbreeding used within a purebred breed to increase the genetic diversity within the breed, particularly when there is a need to avoid inbreeding.

In animal breeding, crossbreeds are crosses within a single species, while hybrids are crosses between different species. In plant breeding terminology, the term crossbreed is uncommon, and no universal term is used to distinguish hybridization or crossing within a population from those between populations, or even those between species.

Allogamy or cross-fertilization is thefertilization of an ovum from one individual with the spermatozoa of another. By contrast, autogamy is the term used for self-fertilization. In humans, the fertilization event is an instance of allogamy. Self-fertilization occurs in hermaphroditic organisms where the two gametes fused in fertilization come from the same individual. This is common in plants (see Sexual reproduction in plants) and certain protozoans.

In plants, allogamy is used specifically to mean the use of pollen from one plant to fertilize the flower of another plant and usually synonymous with the term "cross-fertilization" or "cross-pollination" (outcrossing). The latter term can be used more specifically to mean pollen exchange between different plant strains or even different plant species (where the term cross-hybridization can be used) rather than simply between different individuals.

A mating system is a way in which a group is structured in relation to sexual behaviour. The precise meaning depends upon the context. With respect to animals, the term describes which males and females mate under which circumstances. Recognised systems include monogamy, polygamy (which includes polygyny, polyandry, and polygynandry), and promiscuity, all of which lead to different mate choice outcomes and thus these systems affect how sexual selection works in the species which practice them. In plants, the term refers to the degree and circumstances of outcrossing. In human sociobiology, the terms have been extended to encompass the formation of relationships such as marriage.

Medicago is a genus of flowering plants, commonly known as medick or burclover, in the legume family (Fabaceae). It contains at least 87 species and is distributed mainly around the Mediterranean Basin, and extending across temperate Eurasia and sub-Saharan Africa. The best-known member of the genus is alfalfa (M. sativa), an important forage crop, and the genus name is based on the Latin name for that plant, medica, from Greek: μηδική (πόα) Median (grass). Most members of the genus are low, creeping herbs, resembling clover, but with burs (hence the common name). However, alfalfa grows to a height of 1 meter, and tree medick (M. arborea) is a shrub. Members of the genus are known to produce bioactive compounds such as medicarpin (a flavonoid) and medicagenic acid (a triterpenoid saponin). Chromosome numbers in Medicago range from 2n = 14 to 48.

The species Medicago truncatula is a model legume due to its relatively small stature, small genome (450–500 Mbp), short generation time (about 3 months), and ability to reproduce both by outcrossing and selfing.

The coefficient of inbreeding (COI) is a number measuring how inbred an individual is. Specifically, it is the probability that two alleles at any locus in an individual are identical by descent from a common ancestor of the two parents. A higher COI will make the traits of the offspring more predictable, but also increases the risk of health issues. In dog breeding, it is recommended to keep the COI less than 5%; however, in some breeds this may not be possible without outcrossing.