Neocortex in the context of Subcortical

The human brain is the central organ of the nervous system, and with the spinal cord, comprises the central nervous system. It consists of the cerebrum, the brainstem and the cerebellum. The brain controls most of the activities of the body, processing, integrating, and coordinating the information it receives from the sensory nervous system. The brain integrates sensory information and coordinates instructions sent to the rest of the body.

The cerebrum, the largest part of the human brain, consists of two cerebral hemispheres. Each hemisphere has an inner core composed of white matter, and an outer surface – the cerebral cortex – composed of grey matter. The cortex has an outer layer, the neocortex, and an inner allocortex. The neocortex is made up of six neuronal layers, while the allocortex has three or four. Each hemisphere is divided into four lobes – the frontal, parietal, temporal, and occipital lobes. The frontal lobe is associated with executive functions including self-control, planning, reasoning, and abstract thought, while the occipital lobe is dedicated to vision. Within each lobe, cortical areas are associated with specific functions, such as the sensory, motor, and association regions. Although the left and right hemispheres are broadly similar in shape and function, some functions are associated with one side, such as language in the left and visual-spatial ability in the right. The hemispheres are connected by commissural nerve tracts, the largest being the corpus callosum.

A mammal (from Latin mamma 'breast') is a vertebrate animal of the class Mammalia (/məˈmeɪli.ə/). Mammals are characterised by the presence of milk-producing mammary glands for feeding their young, a broad neocortex region of the brain, fur or hair, and three middle ear bones. These characteristics distinguish them from reptiles and birds, from which their ancestors diverged in the Carboniferous Period over 300 million years ago. Around 6,640 extant species of mammals have been described and divided into 27 orders. The study of mammals is called mammalogy.

The largest orders of mammals, by number of species, are the rodents, bats, and eulipotyphlans (including hedgehogs, moles and shrews). The next three are the primates (including humans, monkeys and lemurs), the even-toed ungulates (including pigs, bovids and whales), and the Carnivora (including cats, dogs, and seals).

The cerebral cortex, also known as the cerebral mantle, is the outer layer of neural tissue of the cerebrum of the brain in humans and other mammals. It is the largest site of neural integration in the central nervous system, and plays a key role in attention, perception, awareness, thought, memory, language, and consciousness.

The six-layered neocortex makes up approximately 90% of the cortex, with the allocortex making up the remainder. The cortex is divided into left and right parts by the longitudinal fissure, which separates the two cerebral hemispheres that are joined beneath the cortex by the corpus callosum and other commissural fibers. In most mammals, apart from small mammals that have small brains, the cerebral cortex is folded, providing a greater surface area in the confined volume of the cranium. Apart from minimising brain and cranial volume, cortical folding is crucial for the brain circuitry and its functional organisation. In mammals with small brains, there is no folding and the cortex is smooth.

The allocortex (from Latin allo-, meaning other, and cortex, meaning bark or crust), or heterogenetic cortex, is one of the two types of cerebral cortex in the brain, together with the neocortex. In the human brain, the allocortex is the much smaller area of cortex taking up just 10%; the neocortex takes up the remaining 90%. It is characterized by having just three cortical layers (one main neural layer), in contrast with the six cortical layers of the neocortex. There are three subtypes of allocortex: the paleocortex, the archicortex, and the periallocortex—a transitional zone between the neocortex and the allocortex.

The specific regions of the brain usually described as belonging to the allocortex are the olfactory system and the hippocampus.

The neural correlates of consciousness (NCC) are the minimal set of neuronal events and mechanisms sufficient for the occurrence of the mental states to which they are related. Neuroscientists use empirical approaches to discover neural correlates of subjective phenomena; that is, neural changes which necessarily and regularly correlate with a specific experience.

The hippocampus (pl.: hippocampi; via Latin from Greek ἱππόκαμπος, 'seahorse'), also hippocampus proper, is a major component of the brain of humans and many other vertebrates. In the human brain the hippocampus, the dentate gyrus, and the subiculum are components of the hippocampal formation located in the limbic system. The hippocampus plays important roles in the consolidation of information from short-term memory to long-term memory, and in spatial memory that enables navigation. In humans and other primates the hippocampus is located in the archicortex, one of the three regions of allocortex, in each hemisphere with direct neural projections to, and reciprocal indirect projections from the neocortex. The hippocampus, as the medial pallium, is a structure found in all vertebrates.

In Alzheimer's disease (and other forms of dementia), the hippocampus is one of the first regions of the brain to be damaged; short-term memory loss and disorientation are included among the early symptoms. Damage to the hippocampus can also result from oxygen starvation (hypoxia), encephalitis, or medial temporal lobe epilepsy. People with extensive, bilateral hippocampal damage may experience anterograde amnesia: the inability to form and retain new memories.

The entorhinal cortex (EC) is an area of the brain's allocortex, located in the medial temporal lobe, whose functions include being a widespread network hub for memory, navigation, and the perception of time. The EC is the main interface between the hippocampus and neocortex. The EC-hippocampus system plays an important role in declarative (autobiographical/episodic/semantic) memories and in particular spatial memories including memory formation, memory consolidation, and memory optimization in sleep. The EC is also responsible for the pre-processing (familiarity) of the input signals in the reflex nictitating membrane response of classical trace conditioning; the association of impulses from the eye and the ear occurs in the entorhinal cortex.

Neuropil (or "neuropile") is any area in the nervous system composed of mostly unmyelinated axons, dendrites and glial cell processes that forms a synaptically dense region containing a relatively low number of cell bodies. The most prevalent anatomical region of neuropil is the brain which, although not completely composed of neuropil, does have the largest and highest synaptically concentrated areas of neuropil in the body. For example, the neocortex and olfactory bulb both contain neuropil.

White matter, which is mostly composed of myelinated axons (hence its white color) and glial cells, is generally not considered to be a part of the neuropil.

Proisocortex or pro-isocortex is one of two subtypes of cortical areas in the areas belonging to the neocortex. The other subtype is termed the true isocortex. Proisocortical areas are transitional areas placed between areas of true isocortex and areas of periallocortex (which themselves are transitional between "true" allocortex and proisocortex). The histological structure of proisocortex is also transitional between true isocortex and either peripaleocortex or periarchicortex, depending on with which subtype of periallocortex the given proisocortical area borders.

Proisocortex is found in the cingulate cortex (part of the limbic system), in Brodmann's areas 24, 25, 30 and 32, the insula and parahippocampal gyrus.

In anatomy of animals, the paleocortex, or paleopallium, is a region within the telencephalon in the vertebrate brain. This type of cortical tissue consists of three cortical laminae (layers of neuronal cell bodies). In comparison, the neocortex has six layers and the archicortex has three or four layers. Because the number of laminae that compose a type of cortical tissue seems to be directly proportional to both the information-processing capabilities of that tissue and its phylogenetic age, paleocortex is thought to be an intermediate between the archicortex (or archipallium) and the neocortex (or neopallium) in both aspects.

The paleocortex (or paleopallium) and the archicortex (or the archipallium) of the cerebral cortex together constitute the mammalian allocortex or the heterogenetic cortex. The distinction for what is called neocortex or isocortex, which comprises most of the human brain (about 90%), is made from the number of cellular layers that the structure comprises. Neocortical tissue comprises six distinct cell layers, not seen in paleocortical tissues either in adult or developing stage.

The archicortex, or archipallium, is the phylogenetically second oldest region of the brain's cerebral cortex (the oldest is the paleocortex). In older species, such as fish, the archipallium makes up most of the cerebrum. Amphibians develop an archipallium and paleopallium.

In humans, the archicortex makes up the three cortical layers of the hippocampus. It has fewer cortical layers than both the neocortex, which has six, and the paleocortex, which has either four or five. The archicortex, along with the paleocortex and periallocortex, is a subtype of allocortex. Because the number of cortical layers that make up a type of cortical tissue seems to be directly proportional to both the information-processing capabilities of that tissue and its phylogenetic age, the archicortex is thought to be the oldest and most basic type of cortical tissue.

Periallocortex is one of three subtypes of allocortex, the other two subtypes being paleocortex and archicortex. The periallocortex is formed at transition areas where any of the other two subtypes of allocortex borders with the neocortex (which is also called isocortex).

Thus, the periallocortex is also subdivided to two subtypes. One subtype is called peripaleocortex, which is formed at borders between paleocortex and neocortex. Areas considered to belong to peripaleocortex are for example anterior insular cortex. Another subtype of periallocortex is called periarchicortex. It is formed at borders between archicortex and neocortex. Areas considered to belong to periarchicortex include entorhinal cortex, perirhinal cortex, presubiculum, parasubiculum, retrosplenial cortex, subcallosal area and subgenual area.

The dorsolateral prefrontal cortex (DLPFC or DL-PFC) is an area in the prefrontal cortex of the primate brain. It is one of the most recently derived parts of the human brain. It undergoes a prolonged period of maturation which lasts into adulthood. The DLPFC is not an anatomical structure, but rather a functional one. It lies in the middle frontal gyrus of humans (i.e., lateral part of Brodmann's area (BA) 9 and 46). In macaque monkeys, it is around the principal sulcus (i.e., in Brodmann's area 46). Other sources consider that DLPFC is attributed anatomically to BA 9 and 46 and BA 8, 9 and 10.

The DLPFC has connections with the orbitofrontal cortex, as well as the thalamus, parts of the basal ganglia (specifically, the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex (including posterior temporal, parietal, and occipital areas). The DLPFC is also the end point for the dorsal pathway (stream), which is concerned with how to interact with stimuli.

Projection fibers consist of efferent and afferent fibers uniting the cortex with the lower parts of the brain and with the spinal cord. In human neuroanatomy, bundles of axons (nerve fibers) called nerve tracts, within the brain, can be categorized by their function into association tracts, projection tracts, and commissural tracts.

In the neocortex, projection neurons are excitatory neurons that send axons to distant brain targets. Considering the six histologically distinct layers of the neocortex, associative projection neurons extend axons within one cortical hemisphere; commissural projection neurons extend axons across the midline to the contralateral hemisphere; and corticofugal projection neurons extend axons away from the cortex. That said, some neurons are multi-functional and can therefore be categorized into more than one such category.

During every moment of an organism's life, sensory information is being taken in by sensory receptors and processed by the nervous system. Sensory information is stored in sensory memory just long enough to be transferred to short-term memory. Humans have five traditional senses: sight, hearing, taste, smell, touch. Sensory memory (SM) allows individuals to retain impressions of sensory information after the original stimulus has ceased. A common demonstration of SM is a child's ability to write letters and make circles by twirling a sparkler at night. When the sparkler is spun fast enough, it appears to leave a trail which forms a continuous image. This "light trail" is the image that is represented in the visual sensory store known as iconic memory. The other two types of SM that have been most extensively studied are echoic memory, and haptic memory; however, it is reasonable to assume that each physiological sense has a corresponding memory store. For example, children have been shown to remember specific "sweet" tastes during incidental learning trials but the nature of this gustatory store is still unclear. However, sensory memories might be related to a region of the thalamus, which serves as a source of signals encoding past experiences in the neocortex.