Molecules in the context of Liquid crystal

In the study of the biological sciences, biocommunication is any specific type of communication within (intraspecific) or between (interspecific) species of plants, animals, fungi, protozoa and microorganisms. Communication means sign-mediated interactions following three levels of rules (syntactic, pragmatic and semantic). Signs in most cases are chemical molecules (semiochemicals), but also tactile, or as in animals also visual and auditive. Biocommunication of animals may include vocalizations (as between competing bird species), or pheromone production (as between various species of insects), chemical signals between plants and animals (as in tannin production used by vascular plants to warn away insects), and chemically mediated communication between plants and within plants.

Biocommunication of fungi demonstrates that mycelia communication integrates interspecific sign-mediated interactions between fungal organisms, soil bacteria and plant root cells without which plant nutrition could not be organized. Biocommunication of Ciliates identifies the various levels and motifs of communication in these unicellular eukaryotes. Biocommunication of Archaea represents key levels of sign-mediated interactions in the evolutionarily oldest akaryotes. Biocommunication of phages demonstrates that the most abundant living agents on this planet coordinate and organize by sign-mediated interactions. Biocommunication is the essential tool to coordinate behavior of various cell types of immune systems.

In physics, electromagnetism is an interaction that occurs between particles with electric charge via electromagnetic fields. The electromagnetic force is one of the four fundamental forces of nature. It is the dominant force in the interactions of atoms and molecules. Electromagnetism can be thought of as a combination of electrostatics and magnetism, which are distinct but closely intertwined phenomena. Electromagnetic forces occur between any two charged particles. Electric forces cause an attraction between particles with opposite charges and repulsion between particles with the same charge, while magnetism is an interaction that occurs between charged particles in relative motion. These two forces are described in terms of electromagnetic fields. Macroscopic charged objects are described in terms of Coulomb's law for electricity and Ampère's force law for magnetism; the Lorentz force describes microscopic charged particles.

The electromagnetic force is responsible for many of the chemical and physical phenomena observed in daily life. The electrostatic attraction between atomic nuclei and their electrons holds atoms together. Electric forces also allow different atoms to combine into molecules, including the macromolecules such as proteins that form the basis of life. Meanwhile, magnetic interactions between the spin and angular momentum magnetic moments of electrons also play a role in chemical reactivity; such relationships are studied in spin chemistry. Electromagnetism also plays several crucial roles in modern technology: electrical energy production, transformation and distribution; light, heat, and sound production and detection; fiber optic and wireless communication; sensors; computation; electrolysis; electroplating; and mechanical motors and actuators.

In physics, a state of matter or phase of matter is one of the distinct forms in which matter can exist. Four states of matter are observable in everyday life: solid, liquid, gas, and plasma.

Different states are distinguished by the ways the component particles (atoms, molecules, ions and electrons) are arranged, and how they behave collectively. In a solid, the particles are tightly packed and held in fixed positions, giving the material a definite shape and volume. In a liquid, the particles remain close together but can move past one another, allowing the substance to maintain a fixed volume while adapting to the shape of its container. In a gas, the particles are far apart and move freely, allowing the substance to expand and fill both the shape and volume of its container. Plasma is similar to a gas, but it also contains charged particles (ions and free electrons) that move independently and respond to electric and magnetic fields.

Chemical energy is the energy of chemical substances that is released when the substances undergo a chemical reaction and transform into other substances. Some examples of storage media of chemical energy include batteries, food, and gasoline (as well as oxygen gas, which is of high chemical energy due to its relatively weak double bond and indispensable for chemical-energy release in gasoline combustion). Breaking and re-making chemical bonds involves energy, which may be either absorbed by or evolved from a chemical system. If reactants with relatively weak electron-pair bonds convert to more strongly bonded products, energy is released. Therefore, relatively weakly bonded and unstable molecules store chemical energy.

Energy that can be released or absorbed because of a reaction between chemical substances is equal to the difference between the energy content of the products and the reactants, if the initial and final temperature is the same. This change in energy can be estimated from the bond energies of the reactants and products. It can also be calculated from ${\displaystyle \Delta {U_{f}^{\circ }}_{\mathrm {reactants} }}$, the internal energy of formation of the reactant molecules, and ${\displaystyle \Delta {U_{f}^{\circ }}_{\mathrm {products} }}$, the internal energy of formation of the product molecules. The internal energy change of a chemical process is equal to the heat exchanged if it is measured under conditions of constant volume and equal initial and final temperature, as in a closed container such as a bomb calorimeter. However, under conditions of constant pressure, as in reactions in vessels open to the atmosphere, the measured heat change is not always equal to the internal energy change, because pressure-volume work also releases or absorbs energy. (The heat change at constant pressure is equal to the enthalpy change, in this case the enthalpy of reaction, if initial and final temperatures are equal).

Semipermeable membrane is a type of synthetic or biologic, polymeric membrane that allows certain molecules or ions to pass through it by osmosis. The rate of passage depends on the pressure, concentration, and temperature of the molecules or solutes on either side, as well as the permeability of the membrane to each solute. Depending on the membrane and the solute, permeability may depend on solute size, solubility, properties, or chemistry. How the membrane is constructed to be selective in its permeability will determine the rate and the permeability. Many natural and synthetic materials which are rather thick are also semipermeable. One example of this is the thin film on the inside of an egg.

Biological membranes are selectively permeable, with the passage of molecules controlled by facilitated diffusion, passive transport or active transport regulated by proteins embedded in the membrane.

An enzyme is a biological macromolecule, usually a protein, that acts as a biological catalyst, accelerating chemical reactions without being consumed in the process. The molecules on which enzymes act are called substrates, which are converted into products. Nearly all metabolic processes within a cell depend on enzyme catalysis to occur at biologically relevant rates. Metabolic pathways are typically composed of a series of enzyme-catalyzed steps. The study of enzymes is known as enzymology, and a related field focuses on pseudoenzymes—proteins that have lost catalytic activity but may retain regulatory or scaffolding functions, often indicated by alterations in their amino acid sequences or unusual 'pseudocatalytic' behavior.

Enzymes are known to catalyze over 5,000 types of biochemical reactions. Other biological catalysts include catalytic RNA molecules, or ribozymes, which are sometimes classified as enzymes despite being composed of RNA rather than protein. More recently, biomolecular condensates have been recognized as a third category of biocatalysts, capable of catalyzing reactions by creating interfaces and gradients—such as ionic gradients—that drive biochemical processes, even when their component proteins are not intrinsically catalytic.

Petroleum naphtha is an intermediate hydrocarbon liquid stream derived from the refining of crude oil with CAS-no 64742-48-9. It is most usually desulfurized and then catalytically reformed, which rearranges or restructures the hydrocarbon molecules in the naphtha as well as breaking some of the molecules into smaller molecules to produce a high-octane component of gasoline (or petrol).

There are hundreds of different petroleum crude oil sources worldwide and each crude oil has its own unique composition or assay. There are also hundreds of petroleum refineries worldwide and each of them is designed to process either a specific crude oil or specific types of crude oils. Naphtha is a general term as each refinery produces its own naphthas with their own unique initial and final boiling points and other physical and compositional characteristics.

Absorption is a physical or chemical phenomenon or a process in which atoms, molecules or ions enter the liquid or solid bulk phase of a material. This is a different process from adsorption, since molecules undergoing absorption are taken up by the volume, not by the surface (as in the case for adsorption).

A more common definition is that "Absorption is a chemical or physical phenomenon in which the molecules, atoms and ions of the substance getting absorbed enter into the bulk phase (gas, liquid or solid) of the material in which it is taken up."

In physics, a rigid body, also known as a rigid object, is a solid body in which deformation is zero or negligible, when a deforming pressure or deforming force is applied on it. The distance between any two given points on a rigid body remains constant in time regardless of external forces or moments exerted on it. A rigid body is usually considered as a continuous distribution of mass. Mechanics of rigid bodies is a field within mechanics where motions and forces of objects are studied without considering effects that can cause deformation (as opposed to mechanics of materials, where deformable objects are considered).

In the study of special relativity, a perfectly rigid body does not exist; and objects can only be assumed to be rigid if they are not moving near the speed of light, where the mass is infinitely large. In quantum mechanics, a rigid body is usually thought of as a collection of point masses. For instance, molecules (consisting of the point masses: electrons and nuclei) are often seen as rigid bodies (see classification of molecules as rigid rotors).

Molecular dynamics (MD) is a computer simulation method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system. In the most common version, the trajectories of atoms and molecules are determined by numerically solving Newton's equations of motion for a system of interacting particles, where forces between the particles and their potential energies are often calculated using interatomic potentials or molecular mechanical force fields. MD simulations are widely applied in chemical physics, materials science, and biophysics.

Because molecular systems typically consist of a vast number of particles, it is impossible to determine the properties of such complex systems analytically; MD simulation circumvents this problem by using numerical methods. However, long MD simulations are mathematically ill-conditioned, generating cumulative errors in numerical integration that can be minimized with proper selection of algorithms and parameters, but not eliminated.

Specialty chemicals (also called specialties or effect chemicals) are particular chemical products that provide a wide variety of effects on which many other industry sectors rely. Some of the categories of speciality chemicals are adhesives, agrichemicals, cleaning materials, colors, cosmetic additives, construction chemicals, elastomers, flavors, food additives, fragrances, industrial gases, lubricants, paints, polymers, surfactants, and textile auxiliaries. Other industrial sectors such as automotive, aerospace, food, cosmetics, agriculture, manufacturing, and textiles are highly dependent on such products.

Speciality chemicals are materials used on the basis of their performance or function. Consequently, in addition to "effect" chemicals they are sometimes referred to as "performance" chemicals or "formulation" chemicals. They can be unique molecules or mixtures of molecules known as formulations. The physical and chemical characteristics of the single molecules or the formulated mixtures of molecules and the composition of the mixtures influences the performance end product. In commercial applications the companies providing these products more often than not provide targeted customer service to innovative individual technical solutions for their customers. This is a differentiating component of the service provided by speciality chemical producers when they are compared to the other sub-sectors of the chemical industry such as fine chemicals, commodity chemicals, petrochemicals and pharmaceuticals.

Peroxides are a group of molecules with the structure R−O−O−R, where each R represents a radical (a portion of a complete molecule; not a free radical) and the O's are single oxygen atoms. Oxygen atoms are joined to each other and to adjacent elements through single covalent bonds, denoted by dashes or lines. The O−O group in a peroxide is often called the peroxide group, though some nomenclature discrepancies exist. This linkage is recognized as a common polyatomic ion, and exists in many molecules.

The number density (symbol: n or ρ_N) is an intensive quantity used to describe the degree of concentration of countable objects (particles, molecules, phonons, cells, galaxies, etc.) in physical space: three-dimensional volumetric number density, two-dimensional areal number density, or one-dimensional linear number density. Population density is an example of areal number density. The term number concentration (symbol: lowercase n, or C, to avoid confusion with amount of substance indicated by uppercase N) is sometimes used in chemistry for the same quantity, particularly when comparing with other concentrations.

In chemistry, the amount of substance (symbol n) in a given sample of matter is defined as a ratio (n = N/N_A) between the number of elementary entities (N) and the Avogadro constant (N_A). The unit of amount of substance in the International System of Units is the mole (symbol: mol), a base unit. Since 2019, the mole has been defined such that the value of the Avogadro constant N_A is exactly 6.02214076×10 mol, defining a macroscopic unit convenient for use in laboratory-scale chemistry. The elementary entities are usually molecules, atoms, ions, or ion pairs of a specified kind. The particular substance sampled may be specified using a subscript or in parentheses, e.g., the amount of sodium chloride (NaCl) could be denoted as n_NaCl or n(NaCl). Sometimes, the amount of substance is referred to as the chemical amount or, informally, as the "number of moles" in a given sample of matter. The latter term is deprecated by the IUPAC because, for a substance X, the correct meaning of "number of moles" is n(X)/mol. The amount of substance in a sample can be calculated from measured quantities, such as mass or volume, given the molar mass of the substance or the molar volume of an ideal gas at a given temperature and pressure.

Liquid crystal (LC) is a state of matter whose properties are between those of conventional liquids and those of solid crystals. For example, a liquid crystal can flow like a liquid, but its molecules may be oriented in a common direction as in a solid. There are many types of LC phases, which can be distinguished by their optical properties (such as textures). The contrasting textures arise due to molecules within one area of material ("domain") being oriented in the same direction but different areas having different orientations. An LC material may not always be in an LC state of matter (just as water may be ice or water vapour).

Liquid crystals can be divided into three main types: thermotropic, lyotropic, and metallotropic. Thermotropic and lyotropic liquid crystals consist mostly of organic molecules, although a few minerals are also known. Thermotropic LCs exhibit a phase transition into the LC phase as temperature changes. Lyotropic LCs exhibit phase transitions as a function of both temperature and concentration of molecules in a solvent (typically water). Metallotropic LCs are composed of both organic and inorganic molecules; their LC transition additionally depends on the inorganic-organic composition ratio.

Contour length is a term used in molecular physics. The contour length of a polymer chain (a big molecule consisting of many similar smaller molecules) is its length at maximum physically possible extension.

Contour length is equal to the product of the number of segments of polymer molecule(n) and its length(l).