Hyphae in the context of Mitochondrion

The Oomycetes (/ˌoʊ.əˈmaɪsiːts/), or Oomycota, form a distinct phylogenetic lineage of fungus-like eukaryotic microorganisms within the Stramenopiles. They are filamentous and heterotrophic, and can reproduce both sexually and asexually. Sexual reproduction of an oospore is the result of contact between hyphae of male antheridia and female oogonia; these spores can overwinter and are known as resting spores. Asexual reproduction involves the formation of chlamydospores and sporangia, producing motile zoospores. Oomycetes occupy both saprophytic and pathogenic lifestyles, and include some of the most notorious pathogens of plants, causing devastating diseases such as late blight of potato and sudden oak death. One oomycete, the mycoparasite Pythium oligandrum, is used for biocontrol, attacking plant pathogenic fungi. The oomycetes are also often referred to as water molds (or water moulds), although the water-preferring nature which led to that name is not true of most species, which are terrestrial pathogens.

Oomycetes were originally grouped with fungi due to similarities in morphology and lifestyle. However, molecular and phylogenetic studies revealed significant differences between fungi and oomycetes which means the latter are now grouped with the stramenopiles (which include some types of algae). The Oomycota have a very sparse fossil record; a possible oomycete has been described from Cretaceous amber.

Yeasts are eukaryotic, single-celled microorganisms classified as members of the fungus kingdom. The first yeast originated hundreds of millions of years ago, and at least 1,500 species are currently recognized. They are estimated to constitute 1% of all described fungal species.

Some yeast species have the ability to develop multicellular characteristics by forming strings of connected budding cells known as pseudohyphae or false hyphae, or quickly evolve into a multicellular cluster with specialised cell organelle functions. Yeast sizes vary greatly, depending on species and environment, typically measuring 3–4 μm in diameter, although some yeasts can grow to 40 μm in size. Most yeasts reproduce asexually by mitosis, and many do so by the asymmetric division process known as budding. With their single-celled growth habit, yeasts can be contrasted with molds, which grow hyphae. Fungal species that can take both forms (depending on temperature or other conditions) are called dimorphic fungi.

In mycology, a stipe (/staɪp/) is the stem or stalk-like feature supporting the cap of a mushroom. Like all tissues of the mushroom other than the hymenium, the stipe is composed of sterile hyphal tissue. In many instances, however, the fertile hymenium extends down the stipe some distance. Fungi that have stipes are said to be stipitate.

The evolutionary benefit of a stipe is generally considered to be in mediating spore dispersal. An elevated mushroom will more easily release its spores into wind currents or onto passing animals. Nevertheless, many mushrooms do not have stipes, including cup fungi, puffballs, earthstars, some polypores, jelly fungi, ergots, and smuts.

Athlete's foot, known medically as tinea pedis, is a common skin infection of the feet caused by a fungus. Signs and symptoms often include itching, scaling, cracking and redness. In rare cases the skin may blister. Athlete's foot fungus may infect any part of the foot, but most often grows between the toes. The next most common area is the bottom of the foot. The same fungus may also affect the nails or the hands. It is a member of the group of diseases known as tinea.

Athlete's foot is caused by a number of different funguses, including species of Trichophyton, Epidermophyton, and Microsporum. The condition is typically acquired by coming into contact with infected skin, or fungus in the environment. Common places where the funguses can survive are around swimming pools and in locker rooms. They may also be spread from other animals. Usually diagnosis is made based on signs and symptoms; however, it can be confirmed either by culture or seeing hyphae using a microscope.

Dry rot is wood decay caused by one of several species of fungi that digest parts of wood which give it strength and stiffness. It was previously used to describe any decay of cured wood in ships and buildings by a fungus which resulted in a darkly colored deteriorated and cracked condition.

The life-cycle of dry rot can be broken down into four main stages. Dry rot begins as a microscopic spore which, in high enough concentrations, can resemble a fine orange dust. If the spores are subjected to sufficient moisture, they will germinate and begin to grow fine white strands known as hyphae. As the hyphae grow they will eventually form a large mass known as mycelium. The final stage is a fruiting body which pumps new spores out into the surrounding air.

The dikaryon (karyogamy) is a cell nucleus feature that is unique to certain fungi. (The green alga Derbesia had been long considered an exception, until the heterokaryotic hypothesis was challenged by later studies.) Compatible cell-types can fuse cytoplasms (plasmogamy). When this occurs, the two nuclei of two cells pair off and cohabit without fusing (karyogamy). This can be maintained for all the cells of the hyphae by synchronously dividing so that pairs are passed to newer cells. In the Ascomycota this attribute is most often found in the ascogenous hyphae and ascocarp while the bulk of the mycelium remains monokaryotic. In the Basidiomycota this is the dominant phase, with most Basidiomycota monokaryons weakly growing and short-lived.

The formation of a dikaryon is a plesiomorphic character for the subkingdom Dikarya, which consists of the Basidiomycota and the Ascomycota. The formation of croziers in the Ascomycota and of clamp connections in the Basidiomycota facilitates maintenance of the dikaryons. However, some fungi in each of these phyla have evolved other methods for maintaining the dikaryons, and therefore neither croziers nor clamp connections are ubiquitous in either phylum.

Microfungi or micromycetes are fungi—eukaryotic organisms such as molds, mildews and rusts—which have microscopic spore-producing structures. They exhibit tube tip-growth and have cell walls composed of chitin, a polymer of N-acetylglucosamine. Microfungi are a paraphyletic group, distinguished from macrofungi only by the absence of a large, multicellular fruiting body. They are ubiquitous in all terrestrial and freshwater and marine environments, and grow in plants, soil, water, insects, cattle rumens, hair, and skin. Most of the fungal body consists of microscopic threads, called hyphae, extending through the substrate in which it grows. The mycelia of microfungi produce spores that are carried by the air, spreading the fungus.

Many microfungi species are benign, existing as soil saprotrophs, for example, largely unobserved by humans. Many thousands of microfungal species occur in lichens, forming symbiotic relationships with algae. Other microfungi, such as those of the genera Penicillium, Aspergillus and Neurospora, were first discovered as molds causing spoilage of fruit and bread.

Mildew is a form of fungus. It is distinguished from the closely related mould largely by its colour: moulds appear in shades of black, blue, red, and green, whereas mildew is white. It appears as a thin, superficial growth consisting of minute hyphae (fungal filaments) produced especially on living plants or organic matter such as wood, paper or leather. Both mould and mildew produce distinct offensive odours, and both are the cause of human ailments.

In horticulture, mildews are species of fungus in the order Erysiphales, or fungus-like organisms in the family Peronosporaceae. It is also used more generally to mean mould growth.

Soredia are common reproductive structures of lichens. Lichens reproduce asexually by employing simple fragmentation and production of soredia and isidia. Soredia are powdery propagules composed of fungal hyphae wrapped around cyanobacteria or green algae. These can be either scattered diffusely across the surface of the lichen's thallus, or produced in localized structures called soralia. Fungal hyphae make up the basic body structure of a lichen. The soredia are released through openings in the upper cortex of the lichen structure. After their release, the soredia disperse to establish the lichen in a new location.

Sporobolomyces is a genus of fungi in the subdivision Pucciniomycotina. Species produce both yeast states and hyphal states. The latter form teliospores from which auricularioid (tubular and laterally septate) basidia emerge, bearing basidiospores. Yeast colonies are salmon-pink to red. Sporobolomyces species occur worldwide and have been isolated (as yeasts) from a wide variety of substrates. They produce ballistoconidia that are bilaterally symmetrical, they have Coenzyme Q₁₀ or Coenzyme Q₁₀(H₂) as their major ubiquinone, they lack xylose in whole-cell hydrolysates, and they cannot ferment sugars. One species, Sporobolomyces salmonicolor, is known to cause disease in humans.

The hymenium is the tissue layer on the hymenophore of a fungal fruiting body where the cells develop into basidia or asci, which produce spores. In some species all of the cells of the hymenium develop into basidia or asci, while in others some cells develop into sterile cells called cystidia (basidiomycetes) or paraphyses (ascomycetes). Cystidia are often important for microscopic identification. The subhymenium consists of the supportive hyphae from which the cells of the hymenium grow, beneath which is the hymenophoral trama, the hyphae that make up the mass of the hymenophore.

The position of the hymenium is traditionally the first characteristic used in the classification and identification of mushrooms. Below are some examples of the diverse types which exist among the macroscopic Basidiomycota and Ascomycota.

The Spitzenkörper (German for 'pointed body', SPK) is a structure found in fungal hyphae that is the organizing center for hyphal growth and morphogenesis. It consists of many small vesicles and is present in growing hyphal tips, during spore germination, and where branch formation occurs. Its position in the hyphal tip correlates with the direction of hyphal growth. The Spitzenkörper is a part of the endomembrane system in fungi.

The vesicles are organized around a central area that contains a dense meshwork of microfilaments. Polysomes are often found closely to the posterior boundary of the Spitzenkörper core within the Ascomycota, microtubules extend into and often through the Spitzenkörper and within the Ascomycota Woronin bodies are found in the apical region near the Spitzenkörper.

Aspergillus oryzae, also known as kōji mold (Japanese: ニホンコウジカビ (日本麹黴), Hepburn: nihon kōji kabi), is a mold used in East Asia to saccharify rice, sweet potato, and barley in the making of alcoholic beverages such as sake and shōchū, and also to ferment soybeans for making soy sauce and miso. It is one of the different koji molds used for food fermentation.

However, in the production of fermented foods of soybeans such as soy sauce and miso, Aspergillus sojae is sometimes used instead of A. oryzae. A. oryzae is also used for the production of rice vinegars. Barley kōji (麦麹) or rice kōji (米麹) are made by fermenting the grains with A. oryzae hyphae.