Glossary of graph theory in the context of Route optimization

A biological network is a method of representing systems as complex sets of binary interactions or relations between various biological entities. In general, networks or graphs are used to capture relationships between entities or objects. A typical graphing representation consists of a set of nodes connected by edges.

In graph theory, a component of an undirected graph is a connected subgraph that is not part of any larger connected subgraph. The components of any graph partition its vertices into disjoint sets, and are the induced subgraphs of those sets. A graph that is itself connected has exactly one component, consisting of the whole graph. Components are sometimes called connected components.

The number of components in a given graph is an important graph invariant, and is closely related to invariants of matroids, topological spaces, and matrices. In random graphs, a frequently occurring phenomenon is the incidence of a giant component, one component that is significantly larger than the others; and of a percolation threshold, an edge probability above which a giant component exists and below which it does not.

In graph theory, reachability refers to the ability to get from one vertex to another within a graph. A vertex ${\displaystyle s}$ can reach a vertex ${\displaystyle t}$ (and ${\displaystyle t}$ is reachable from ${\displaystyle s}$) if there exists a sequence of adjacent vertices (i.e. a walk) which starts with ${\displaystyle s}$ and ends with ${\displaystyle t}$.

In an undirected graph, reachability between all pairs of vertices can be determined by identifying the connected components of the graph. Any pair of vertices in such a graph can reach each other if and only if they belong to the same connected component; therefore, in such a graph, reachability is symmetric (${\displaystyle s}$ reaches ${\displaystyle t}$ iff ${\displaystyle t}$ reaches ${\displaystyle s}$). The connected components of an undirected graph can be identified in linear time. The remainder of this article focuses on the more difficult problem of determining pairwise reachability in a directed graph (which, incidentally, need not be symmetric).