Stem-group in the context of "Acanthodii"

The subphylum Chelicerata (from Neo-Latin, from French chélicère, from Ancient Greek χηλή (khēlḗ) 'claw, chela' and κέρας (kéras) 'horn') constitutes one of the major subdivisions of the phylum Arthropoda. Chelicerates include the sea spiders, horseshoe crabs, and arachnids (including harvestmen, scorpions, spiders, solifuges, ticks, and mites, among many others), as well as a number of extinct lineages, such as the eurypterids (sea scorpions) and chasmataspidids.

Chelicerata split from Mandibulata by the mid-Cambrian, as evidenced by stem-group chelicerates like Habeliida and Mollisonia present by this time. The surviving marine species include the four species of xiphosurans (horseshoe crabs), and possibly the 1,300 species of pycnogonids (sea spiders), if the latter are indeed chelicerates. On the other hand, there are over 77,000 well-identified species of air-breathing chelicerates, and there may be about 500,000 unidentified species.

Acanthodii or acanthodians is an extinct class of gnathostomes (jawed fishes). They are currently considered to represent a paraphyletic grade of various fish lineages basal to extant Chondrichthyes, which includes living sharks, rays, and chimaeras. Acanthodians possess a mosaic of features shared with both osteichthyans (bony fish) and chondrichthyans (cartilaginous fish). In general body shape, they were similar to modern sharks, but their epidermis was covered with tiny rhomboid platelets like the scales of holosteians (gars, bowfins).

The popular name "spiny sharks" is because they were superficially shark-shaped, with a streamlined body, paired fins, a strongly upturned tail, and stout, largely immovable bony spines supporting all the fins except the tail—hence, "spiny sharks". However, acanthodians are not true sharks; their close relation to modern cartilaginous fish can lead them to be considered "stem-sharks". Acanthodians had a cartilaginous skeleton, but their fins had a wide, bony base and were reinforced on their anterior margin with a dentine spine. As a result, fossilized spines and scales are often all that remains of these fishes in ancient sedimentary rocks. The earliest acanthodians were marine, but during the Devonian, freshwater species became predominant.

Caecilians (/sɪˈsɪliən/; New Latin for 'blind ones') are a group of limbless, worm-shaped or snake-shaped amphibians, with either small eyes or no eyes, comprising the order Gymnophiona. They mostly live hidden in soil or in streambeds, making them some of the least familiar amphibians. Modern caecilians live in the tropics of South and Central America, Africa, and southern Asia. Caecilians feed on small subterranean creatures, such as earthworms. The body is noodle-like and often dark in colour, and the skull is bullet-shaped and strongly built. Caecilian heads have several unique adaptations, such as fused skull and jaw bones, a two-part system of jaw muscles, and chemosensory tentacles between the eyes and nostrils. The skin is slimy, with ringlike markings or grooves, and in some species hides scales underneath.

Modern caecilians are a clade, the order Gymnophiona /ˌdʒɪmnəˈfaɪənə/ (or Apoda /ˈæpədə/), one of the three living amphibian groups alongside Anura (frogs) and Urodela (salamanders). Gymnophiona is a crown group, encompassing all modern caecilians and all descendants of their last common ancestor. There are more than 220 living species of caecilian classified in 10 families. Gymnophionomorpha is a recently coined name for the corresponding total group which includes Gymnophiona as well as a few extinct stem-group caecilians (extinct amphibians whose closest living relatives are caecilians but are not descended from any caecilian). Some palaeontologists have used the name Gymnophiona for the total group and the old name Apoda for the crown group. However, Apoda has other even older uses, including as the name of a genus of butterfly, making its use potentially confusing and best avoided. The clade's name 'Gymnophiona' comes from Ancient Greek γυμνος (gumnos), meaning "naked", and ὄφις (óphis), meaning "snake", as the caecilians were originally thought to be related to snakes and to lack scales.

Sauropsida (Greek for "lizard faces") is a clade of amniotes, broadly equivalent to the class Reptilia, though typically used in a broader sense to also include extinct stem-group relatives of modern reptiles and birds (which, as theropod dinosaurs, are nested within reptiles as more closely related to crocodilians than to lizards or turtles). The most popular definition states that Sauropsida is the sibling taxon to Synapsida, the other clade of amniotes which includes mammals as its only modern representatives. Although early synapsids have historically been referred to as "mammal-like reptiles", all synapsids are more closely related to mammals than to any modern reptile. Sauropsids, on the other hand, include all amniotes more closely related to modern reptiles than to mammals. This includes Aves (birds), which are a group of theropod dinosaurs despite originally being named as a separate class in Linnaean taxonomy.

The base of Sauropsida is traditionally divided into main groups of "reptiles": Eureptilia ("true reptiles") and Parareptilia ("next to reptiles"). Eureptilia encompasses all living reptiles (including birds), as well as various extinct groups. Parareptilia is typically considered to be an entirely extinct group, though a few hypotheses for the origin of turtles have suggested that they belong to the parareptiles. The clades Recumbirostra and Varanopidae, traditionally thought to be lepospondyls and synapsids respectively, may also be basal sauropsids. The term "Sauropsida" originated in 1864 with Thomas Henry Huxley, who grouped birds with reptiles based on fossil evidence. The divisions of "Eureptilia" and "Parareptilia" have been challenged in a number of recent studies, who find that they do not represent monophyletic groups.

Panarthropoda is a clade comprising the greatest diversity of animal groups. It contains the extant phyla Arthropoda (Euarthropoda), Tardigrada (water bears) and Onychophora (velvet worms), although the relationships among these remained uncertain according to studies published in 2023 and 2024. Panarthropods also include extinct marine legged worms known as lobopodians ("Lobopodia"), a paraphyletic group where the last common ancestor and basal members (stem-group) of each extant panarthropod phylum are thought to have risen. However the term "Lobopodia" is sometimes expanded to include tardigrades and onychophorans as well.

Common characteristics of the Panarthropoda include a segmented body, paired ladder-like ventral nervous system, and the presence of paired appendages correlated with body segments.

Habeliida is an order of extinct arthropods that existed during the middle Cambrian. It is divided into two families, Habeliidae (monotypic, containing only Habelia), and Sanctacarididae (containing Sanctacaris, Utahcaris and Wisangocaris). They are thought to have been durophagous, with robust gnathobases (spined basal sections of limbs) used to shred hard-shelled organisms. Remains of trilobites have been found as stomach contents in Wisangocaris. Messorocaris has been suggested to be part of the order in some studies, but this is uncertain. They are suggested to be stem-group chelicerates, though they lack the chelicerae present in true chelicerates.

Cladogram after O’Flynn et al, 2023: