Phylogenetic tree in the context of "Bioinformatics"

A language family is a group of languages related through descent from a common ancestor, called the proto-language of that family. The term family is a metaphor borrowed from biology, with the tree model used in historical linguistics analogous to a family tree, or to phylogenetic trees of taxa used in evolutionary taxonomy. Linguists thus describe the daughter languages within a language family as being genetically related. The divergence of a proto-language into daughter languages typically occurs through geographical separation, with different regional dialects of the proto-language undergoing different language changes and thus becoming distinct languages over time.

One well-known example of a language family is the Romance languages, including Spanish, French, Italian, Portuguese, Romanian, Catalan, Romansh, and many others, all of which are descended from Vulgar Latin. The Romance family itself is part of the larger Indo-European family, which includes many other languages native to Europe and South Asia, all believed to have descended from a common ancestor known as Proto-Indo-European.

Systematics is the study of the diversification of living forms, both past and present, and the relationships among living things through time. Relationships are visualized as evolutionary trees (synonyms: phylogenetic trees, phylogenies). Phylogenies have two components: branching order (showing group relationships, graphically represented in cladograms) and branch length (showing amount of evolution). Phylogenetic trees of species and higher taxa are used to study the evolution of traits (e.g., anatomical or molecular characteristics) and the distribution of organisms (biogeography). Systematics, in other words, is used to understand the evolutionary history of life on Earth.

The word systematics is derived from the Latin word of Ancient Greek origin systema, which means systematic arrangement of organisms. Carl Linnaeus used 'Systema Naturae' as the title of his book.

In historical linguistics, the tree model (also Stammbaum, genetic, or cladistic model) is a model of the evolution of languages analogous to the concept of a family tree, particularly a phylogenetic tree in the biological evolution of species. As with species, each language is assumed to have evolved from a single parent or "mother" language, with languages that share a common ancestor belonging to the same language family.

Popularized by the German linguist August Schleicher in 1853, the tree model has been a common method of describing genetic relationships between languages since the first attempts to do so. It is central to the field of comparative linguistics, which involves using evidence from known languages and observed rules of language feature evolution to identify and describe the hypothetical proto-languages ancestral to each language family, such as Proto-Indo-European and the Indo-European languages. However, this is largely a theoretical, qualitative pursuit, and linguists have always emphasized the inherent limitations of the tree model due to the large role played by horizontal transmission in language evolution, ranging from loanwords to creole languages that have multiple mother languages. The wave model was developed in 1872 by Schleicher's student Johannes Schmidt as an alternative to the tree model that incorporates horizontal transmission.

The last universal common ancestor (LUCA) is the hypothesized common ancestral cell population from which all subsequent life forms descend, including Bacteria, Archaea, and Eukarya. The cell had a lipid bilayer; it possessed the genetic code and ribosomes which translated from DNA or RNA to proteins. Although the timing of the LUCA cannot be definitively constrained, most studies suggest that the LUCA existed by 3.5 billion years ago, and possibly as early as 4.3 billion years ago or earlier. The nature of this point or stage of divergence remains a topic of research.

All earlier forms of life preceding this divergence and all extant organisms are generally thought to share common ancestry. On the basis of a formal statistical test, this theory of a universal common ancestry (UCA) is supported in preference to competing multiple-ancestry hypotheses. The first universal common ancestor (FUCA) is a hypothetical non-cellular ancestor to LUCA and other now-extinct sister lineages.

The three-domain system is a taxonomic classification system that groups all cellular life into three domains, namely Archaea, Bacteria and Eukarya, introduced by Carl Woese, Otto Kandler and Mark Wheelis in 1990. The key difference from earlier classifications such as the two-empire system and the five-kingdom classification is the splitting of Archaea (previously named "archaebacteria") from Bacteria as completely different organisms.

The three domain hypothesis is considered obsolete by some who believe that eukaryotes do not form a separate domain of life, but arose from a fusion between an Archaea species and a Bacteria species. (see Two-domain system)

In biology, phylogenetics (/ˌfaɪloʊdʒəˈnɛtɪks, -lə-/) is the study of the evolutionary history of life using observable characteristics of organisms (or genes), which is known as phylogenetic inference. It infers the relationship among organisms based on empirical data and observed heritable traits of DNA sequences, protein amino acid sequences, and morphology. The results are a phylogenetic tree—a diagram depicting the hypothetical relationships among the organisms, reflecting their inferred evolutionary history.

The tips of a phylogenetic tree represent the observed entities, which can be living taxa or fossils. A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the taxa represented on the tree. An unrooted tree diagram (a network) makes no assumption about directionality of character state transformation, and does not show the origin or "root" of the taxa in question.

A cladogram (from Greek κλάδος klados "branch" and γραμμα gramma "character") is a diagram used in cladistics to show evolutionary relations (common descent) between groups of organisms. Cladograms are a type (subset) of phylogenetic trees that do not normally show evolutionary time but are required to meet specific criteria defined by cladistics. Like other evolutionary trees, cladograms can be used show actual, hypothesized, or even hypothetical descent. Modern cladograms are most often generated algorithmically through computational phylogenetics using genetic data, typically from DNA sequencing, as part of a molecular systematics approach.

A cladogram uses lines that branch off in different directions ending at a clade, a group of organisms with a last common ancestor. There are many shapes of cladograms but they all have lines that branch off from other lines. The lines can be traced back to where they branch off. These branching off points represent a hypothetical ancestor (not an actual entity) which can be inferred to exhibit the traits shared among the terminal taxa above it. This hypothetical ancestor might then provide clues about the order of evolution of various features, adaptation, and other evolutionary narratives about ancestors.