Biogeography in the context of FishBase

In biogeography, the Mediterranean basin (/ˌmɛdɪtəˈreɪniən/ MED-ih-tə-RAY-nee-ən), also known as the Mediterranean region or sometimes Mediterranea, is the region of lands around the Mediterranean Sea that have mostly a Mediterranean climate, with mild to cool, rainy winters and warm to hot, dry summers, which supports characteristic Mediterranean forests, woodlands, and scrub vegetation.

Ecology (from Ancient Greek οἶκος (oîkos)  'house' and -λογία (-logía)  'study of') is the natural science of the relationships among living organisms and their environment. Ecology considers organisms at the individual, population, community, ecosystem, and biosphere levels. Ecology overlaps with the closely related sciences of biogeography, evolutionary biology, genetics, ethology, and natural history.

Ecology is a branch of biology, and is the study of abundance, biomass, and distribution of organisms in the context of the environment. It encompasses life processes, interactions, and adaptations; movement of materials and energy through living communities; successional development of ecosystems; cooperation, competition, and predation within and between species; and patterns of biodiversity and its effect on ecosystem processes.

Evolutionary biology is a subfield of biology that analyzes the four mechanisms of evolution: natural selection, mutation, genetic drift, and gene flow. The purpose of evolutionary biology is to observe the diversity of life on Earth. The idea of natural selection was first researched by Charles Darwin as he studied bird beaks. The discipline of evolutionary biology emerged through what Julian Huxley called the modern synthesis of understanding, from previously unrelated fields of biological research, such as genetics and ecology, systematics, and paleontology. Huxley was able to take what Charles Darwin discovered and elaborate to build on his understandings.

The investigational range of current research has widened to encompass the genetic architecture of adaptation, molecular evolution, and the different forces that contribute to evolution, such as sexual selection, genetic drift, and biogeography. The newer field of evolutionary developmental biology ("evo-devo") investigates how embryogenesis is controlled, thus yielding a wider synthesis that integrates developmental biology with the fields of study covered by the earlier evolutionary synthesis.

Systematics is the study of the diversification of living forms, both past and present, and the relationships among living things through time. Relationships are visualized as evolutionary trees (synonyms: phylogenetic trees, phylogenies). Phylogenies have two components: branching order (showing group relationships, graphically represented in cladograms) and branch length (showing amount of evolution). Phylogenetic trees of species and higher taxa are used to study the evolution of traits (e.g., anatomical or molecular characteristics) and the distribution of organisms (biogeography). Systematics, in other words, is used to understand the evolutionary history of life on Earth.

The word systematics is derived from the Latin word of Ancient Greek origin systema, which means systematic arrangement of organisms. Carl Linnaeus used 'Systema Naturae' as the title of his book.

In biogeography, a land bridge is an isthmus or wider land connection between otherwise separate areas, over which animals and plants are able to cross and colonize new lands. A land bridge can be created by marine regression, in which sea levels fall, exposing shallow, previously submerged sections of continental shelf; or when new land is created by plate tectonics; or occasionally when the sea floor rises due to post-glacial rebound after an ice age.

The Sahel region (/səˈhɛl/; from Arabic ساحل (sāḥil [ˈsaːħil]) 'coast, shore'), or Sahelian acacia savanna, is a biogeographical region in Africa. It is the transition zone between the more humid Sudanian savannas to its south and the drier Sahara to the north. The Sahel has a hot semi-arid climate and stretches across the southernmost latitudes of North Africa between the Atlantic Ocean and the Red Sea. Although geographically located in the tropics, the Sahel does not have a tropical climate.

Especially in the western Sahel, there are frequent shortages of food and water due to its very high government corruption and the semi-arid climate. Nonetheless the region has sustained very high human birthrates, resulting in a rapid increase in population. In recent times, various coups, insurgencies, terrorism and foreign interventions have taken place in many Sahel countries, especially across former Françafrique.

Alfred Russel Wallace (8 January 1823 – 7 November 1913) was an English naturalist, explorer, geographer, anthropologist, biologist and illustrator. He independently conceived the theory of evolution through natural selection; his 1858 paper on the subject was published that year alongside extracts from Charles Darwin's writings on the topic. It spurred Darwin to set aside the "big species book" he was drafting and to quickly write an abstract of it, which was published in 1859 as On the Origin of Species.

Wallace did extensive fieldwork, starting in the Amazon River basin. He then did fieldwork in the Malay Archipelago, where he identified the faunal divide now termed the Wallace Line, which separates the Indonesian archipelago into two distinct parts: a western portion in which the animals are largely of Asian origin, and an eastern portion where the fauna reflect Australasia. He was considered the 19th century's leading expert on the geographical distribution of animal species, and is sometimes called the "father of biogeography", or more specifically of zoogeography.

Phytogeography (from Greek φυτόν, phytón 'plant' and γεωγραφία, geographía 'geography' meaning also distribution) or botanical geography is the branch of biogeography that is concerned with the geographic distribution of plant species and their influence on the earth's surface. Phytogeography is concerned with all aspects of plant distribution, from the controls on the distribution of individual species ranges (at both large and small scales, see species distribution) to the factors that govern the composition of entire communities and floras. Geobotany, by contrast, focuses on the geographic space's influence on plants.

Zoogeography is the branch of the science of biogeography that is concerned with geographic distribution (present and past) of animal species.

As a multifaceted field of study, zoogeography incorporates methods of molecular biology, genetics, morphology, phylogenetics, and Geographic Information Systems (GIS) to delineate evolutionary events within defined regions of study around the globe. As proposed by Alfred Russel Wallace, known as the father of zoogeography, phylogenetic affinities can be quantified among zoogeographic regions, further elucidating the phenomena surrounding geographic distributions of organisms and explaining evolutionary relationships of taxa.

The history of biology traces the study of the living world from ancient to modern times. Although the concept of biology as a single coherent field arose in the 19th century, the biological sciences emerged from traditions of medicine and natural history reaching back to Ayurveda, ancient Egyptian medicine and the works of Aristotle, Theophrastus and Galen in the ancient Greco-Roman world. This ancient work was further developed in the Middle Ages by Muslim physicians and scholars such as Avicenna. During the European Renaissance and early modern period, biological thought was revolutionized in Europe by a renewed interest in empiricism and the discovery of many novel organisms. Prominent in this movement were Vesalius and Harvey, who used experimentation and careful observation in physiology, and naturalists such as Linnaeus and Buffon who began to classify the diversity of life and the fossil record, as well as the development and behavior of organisms. Antonie van Leeuwenhoek revealed by means of microscopy the previously unknown world of microorganisms, laying the groundwork for cell theory. The growing importance of natural theology, partly a response to the rise of mechanical philosophy, encouraged the growth of natural history (although it entrenched the argument from design).

Over the 18th and 19th centuries, biological sciences such as botany and zoology became increasingly professional scientific disciplines. Lavoisier and other physical scientists began to connect the animate and inanimate worlds through physics and chemistry. Explorer-naturalists such as Alexander von Humboldt investigated the interaction between organisms and their environment, and the ways this relationship depends on geography—laying the foundations for biogeography, ecology and ethology. Naturalists began to reject essentialism and consider the importance of extinction and the mutability of species. Cell theory provided a new perspective on the fundamental basis of life. These developments, as well as the results from embryology and paleontology, were synthesized in Charles Darwin's theory of evolution by natural selection. The end of the 19th century saw the fall of spontaneous generation and the rise of the germ theory of disease, though the mechanism of inheritance remained a mystery.

In biogeography, a cosmopolitan distribution is the range of a taxon that extends across most or all of the surface of the Earth, in appropriate habitats; most cosmopolitan species are known to be highly adaptable to a range of climatic and environmental conditions, though this is not always so. Killer whales (orcas) are among the most well-known cosmopolitan species on the planet, as they maintain several different resident and transient populations in every major oceanic body on Earth, from the Arctic Circle to Antarctica and every coastal and open-water region in-between. Such a taxon (usually a species) is said to have a cosmopolitan distribution, or exhibit cosmopolitanism, as a species; another example, the rock dove (commonly referred to as a 'pigeon'), in addition to having been bred domestically for centuries, now occurs in most urban areas around the world.

The extreme opposite of a cosmopolitan species is an endemic (native) species, or one found only in a single geographical location. Endemism usually results in organisms with specific adaptations to one particular climate or region, and the species would likely face challenges if placed in a different environment. There are far more examples of endemic species than cosmopolitan species; one example being the snow leopard, a species found only in Central Asian mountain ranges, an environment to which the cats have adapted over millions of years.

In biogeography, a native species is indigenous to a given region or ecosystem if its presence in that region is the result of only local natural evolution (though often popularised as "with no human intervention") during history. The term is equivalent to the concept of indigenous or autochthonous species.

A wild organism (as opposed to a domesticated organism) is known as an introduced species within the regions where it was anthropogenically introduced. If an introduced species causes substantial ecological, environmental, and/or economic damage, it may be regarded more specifically as an invasive species.

Species richness, or biodiversity, increases from the poles to the tropics for a wide variety of terrestrial and marine organisms, often referred to as the latitudinal diversity gradient. The latitudinal diversity gradient is one of the most widely recognized patterns in ecology. It has been observed to varying degrees in Earth's past. A parallel trend has been found with elevation (elevational diversity gradient), though this is less well-studied.

Explaining the latitudinal diversity gradient has been called one of the great contemporary challenges of biogeography and macroecology (Willig et al. 2003, Pimm and Brown 2004, Cardillo et al. 2005). The question "What determines patterns of species diversity?" was among the 25 key research themes for the future identified in 125th Anniversary issue of Science (July 2005). There is a lack of consensus among ecologists about the mechanisms underlying the pattern, and many hypotheses have been proposed and debated. A recent review noted that among the many conundrums associated with the latitudinal diversity gradient (or latitudinal biodiversity gradient) the causal relationship between rates of molecular evolution and speciation has yet to be demonstrated.

The Central American Seaway (also known as the Panamanic Seaway, Inter-American Seaway and Proto-Caribbean Seaway) was a prehistoric body of water that once connected the Pacific Ocean to the Atlantic Ocean, separating North America from South America. It formed during the Jurassic (200–154 Ma) during the initial breakup of the supercontinent Pangaea into Laurasia and Gondwana, forming a mediterranean sea between the Panthalassia and Tethys Ocean, and finally closed when the Isthmus of Panama was formed by volcanic activity in the late Pliocene (2.76–2.54 Ma). The modern-day remnants of the seaway are the Gulf of Mexico, Caribbean Sea and the Central Atlantic region around the Sargasso Sea.

The closure of the Central American Seaway had tremendous effects on oceanic circulation and the biogeography of the adjacent seas, isolating many species and triggering speciation and diversification of tropical and sub-tropical marine fauna. The inflow of nutrient-rich water of deep Pacific origin into the Caribbean was blocked and so local species had to adapt to an environment of lower productivity. It had an even larger impact on terrestrial life. The seaway had isolated South America for much of the Cenozoic, which allowed the evolution of a wholly unique diverse mammalian fauna there. When it closed, a faunal exchange with North America ensued and led to the extinction of many of the native South American forms.

The Great American Biotic Interchange (commonly abbreviated as GABI), also known as the Great American Interchange and the Great American Faunal Interchange, was an important late Cenozoic paleozoogeographic biotic interchange event in which land and freshwater fauna migrated from North America to South America via Central America and vice versa, as the volcanic Isthmus of Panama rose up from the sea floor, forming a land bridge between the previously separated continents. Although earlier dispersals had occurred, probably over water, the migration accelerated dramatically about 2.7 million years (Ma) ago during the Piacenzian age. It resulted from the joining of the Neotropic (roughly South American) and Nearctic (roughly North American) biogeographic realms definitively to form the Americas. The interchange is visible from observation of both biostratigraphy and nature (neontology). Its most dramatic effect is on the zoogeography of mammals, but it also gave an opportunity for reptiles, amphibians, arthropods, weak-flying or flightless birds, and even freshwater fish to migrate. Coastal and marine biota were affected in the opposite manner; the formation of the Central American Isthmus caused what has been termed the Great American Schism, with significant diversification and extinction occurring as a result of the isolation of the Caribbean from the Pacific.

The occurrence of the interchange was first discussed in 1876 by the "father of biogeography", Alfred Russel Wallace. Wallace had spent five years exploring and collecting specimens in the Amazon basin. Others who made significant contributions to understanding the event in the century that followed include Florentino Ameghino, W. D. Matthew, W. B. Scott, Bryan Patterson, George Gaylord Simpson and S. David Webb. The Pliocene timing of the formation of the connection between North and South America was discussed in 1910 by Henry Fairfield Osborn.