Animal coloration in the context of "Signalling theory"

In genetics, the phenotype (from Ancient Greek φαίνω (phaínō) 'to appear, show' and τύπος (túpos) 'mark, type') is the set of observable characteristics or traits of an organism. The term covers all traits of an organism other than its genome, however transitory: the organism's morphology (physical form and structure), its developmental processes, its biochemical and physiological properties whether reversible or irreversible, and all its behavior, from a peacock's display to the phone number you half remember. An organism's phenotype results from two basic factors: the expression of an organism's unique profile of genes (its genotype) and the influence of environmental factors experienced by that same organism which influence the variable expression of said genes, and thereby shape the resulting profile of defining traits. Since the developmental process is a complex interplay of gene-environment, gene-gene interactions, there is a high degree of phenotypic variation in a given population that extends beyond mere genotypic variation.

A well-documented example of polymorphism is Labrador Retriever coloring; while the coat color depends on many genes, it is clearly seen in the environment as yellow, black, and brown. Richard Dawkins in 1978 and again in his 1982 book The Extended Phenotype suggested that one can regard bird nests and other built structures such as caddisfly larva cases and beaver dams as "extended phenotypes".

In zoology, a scale (Ancient Greek: λεπίς, romanized: lepís; Latin: squāma) is a small rigid plate made out of keratin that grows out of vertebrate animals' skin to provide protection. In lepidopterans (butterflies and moths), scales are plates on the surface of the insect wing, made out of chitin instead of keratin, and provide coloration. Scales are quite common and have evolved multiple times through convergent evolution, with varying structure and function.

Scales are generally classified as part of an organism's integumentary system. There are various types of scales according to the shape and class of an animal.

Bovidae is the biological family of cloven-hoofed, ruminant mammals that includes cattle, bison, buffalo, antelopes, and goat-antelopes such as sheep and goats. There are 143 extant species and 300 known extinct species of bovids, which are divided into either 11 major subfamilies, or two subfamilies with thirteen tribes. The earliest known bovid had evolved by 20 million years ago, in the early Miocene.

The bovids show great variation in size and colouration of their fur. With exceptions in some domesticated forms, all male bovids have two or more horns, and in many species, females possess horns too. The size and shape of the horns vary greatly, but the basic structure is always one or more pairs of simple, unbranched, bony protrusions of the skull covered in a permanent sheath of keratin, and often with a spiral, twisted, or fluted shape, Most bovids bear 30 to 32 teeth.

Countershading, or Thayer's law, is a method of camouflage in which an animal's coloration is darker on the top or upper side and lighter on the underside of the body. This pattern is found in many species of mammals, reptiles, birds, fish, and insects, both in predators and in prey.

When light falls from above on a uniformly coloured three-dimensional object such as a sphere, it makes the upper side appear lighter and the underside darker, grading from one to the other. This pattern of light and shade makes the object appear solid, and therefore easier to detect. The classical form of countershading, discovered in 1909 by the artist Abbott Handerson Thayer, works by counterbalancing the effects of self-shadowing, again typically with grading from dark to light. In theory this could be useful for military camouflage, but in practice it has rarely been applied, despite the best efforts of Thayer and, later, in the Second World War, of the zoologist Hugh Cott.

Chromatophores are cells that produce color, of which many types are pigment-containing cells, or groups of cells, found in a wide range of animals including amphibians, fish, reptiles, crustaceans and cephalopods. Mammals and birds, in contrast, have a class of cells called melanocytes for coloration.

Chromatophores are largely responsible for generating skin and eye colour in ectothermic animals and are generated in the neural crest during embryonic development. Mature chromatophores are grouped into subclasses based on their colour under white light: xanthophores (yellow), erythrophores (red), iridophores (reflective / iridescent), leucophores (white), melanophores (black/brown), and cyanophores (blue). While most chromatophores contain pigments that absorb specific wavelengths of light, the color of leucophores and iridophores is produced by their respective scattering and optical interference properties.