Allopatry in the context of Gene pool

In biology, two closely related species or populations are considered sympatric when they exist in the same geographic area and thus frequently encounter each other. An initially interbreeding population that splits into two or more distinct species sharing a common range exemplifies sympatric speciation. Such speciation may be a product of reproductive isolation – which prevents hybrid offspring from being viable or able to reproduce, thereby reducing gene flow – that results in genetic divergence. Sympatric speciation may, but need not, arise through secondary contact, which refers to speciation or divergence in allopatry followed by range expansions leading to an area of sympatry. Sympatric species or taxa in secondary contact may or may not interbreed.

In biology, a refugium (plural: refugia) is a location which supports an isolated or relict population of a once more widespread species. This isolation (allopatry) can be due to climatic changes, geography, or human activities such as deforestation and overhunting.

Present examples of refugial animal species are the mountain gorilla, isolated to specific mountains in central Africa, and the Australian sea lion, isolated to specific breeding beaches along the south-west coast of Australia, due to humans taking so many of their number as game. This resulting isolation, in many cases, can be seen as only a temporary state; however, some refugia may be longstanding, thereby having many endemic species, not found elsewhere, which survive as relict populations. The Indo-Pacific Warm Pool has been proposed to be a longstanding refugium, based on the discovery of the "living fossil" of a marine dinoflagellate called Dapsilidinium pastielsii, currently found only in the Indo-Pacific Warm Pool.

In parapatric speciation, two subpopulations of a species evolve reproductive isolation from one another while continuing to exchange genes. This mode of speciation has three distinguishing characteristics: 1) mating occurs non-randomly, 2) gene flow occurs unequally, and 3) populations exist in either continuous or discontinuous geographic ranges. This distribution pattern may be the result of unequal dispersal, incomplete geographical barriers, or divergent expressions of behavior, among other things. Parapatric speciation predicts that hybrid zones will often exist at the junction between the two populations.

In biogeography, the terms parapatric and parapatry are often used to describe the relationship between organisms whose ranges do not significantly overlap but are immediately adjacent to each other; they do not occur together except in a narrow contact zone. Parapatry is a geographical distribution opposed to sympatry (same area) and allopatry or peripatry (two similar cases of distinct areas).